育人之星表怎样填:常用的生物信息学网址大全,非常全面
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常用的生物信息学网址大全,非常全面
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www.shumo.cn 时间:2006-12-26 13:42:58 来源: 点击:3761
用生物信息学数据库和分析工具网址
数据库
因特网网址
网上生物信息学教程 EMBL biocomputing tutorials
http://www.bio.cam.ac.uk/Embnetut/Gcg/index.html Plant genome dababase tutorial
http://www.nal.usda.gov/pgdic
生物信息学机构
NCBI
http://www.ncbi.nlm.nih.gov/
International Nucleotide Sequence Database Collaboration.
http://www.ncbi.nlm.nih.gov/collab/ EBI
http://www.ebi.ac.uk/ USDA
http://www.nal.usda.gov/ Sanger Centre
http://genomic.sanger.ac.uk/ 北京大学生物信息学中心
http://www.cbi.pku.edu.cn
数据库信息发布及其它
GenBank Release Notes
ftp://ncbi.nlm.nih.gov/genbank/gbrel.txt
dbEST summary report
http://www.ncbi.nlm.nih.gov/dbEST/dbESTsummarv.html
EMBL release notes
http://www.genome.ad.jp/dbget-bin/show man?embl
DDBJ release notes
http://www.ddbj.nig.ac.jp/ddbjnew/ddbj relnote.html
Eukaryotic promoter database release notes
http://www.genome.ad.jp/dbget/dbget2.html
SwissProt release notes
http://www.genome.ad.jp/dbget-bin/show man?swissprot
PIR release notes
http://www.genome.ad.jp/dbget-bin/show man?pir
PRF release notes
http://www.genome.ad.jp/dbget-bin/show man?prf
PDBSTR release notes
http://www.genome.ad.jp/dbget-bin/show man?pdbstr
Prosite release notes
http://www.genome.ad.jp/dbget-bin/show man?prosite
PDB release notes
http://www.genome.ad.jp/dbget-bin/show man?pdb
KEGG release notes
http://www.genome.ad.jp/dbget-bin/show man?pathway
核苷酸数据库
GenBank
http://www.ncbi.nlm.nih.gov/
dbEST
http://www.ncbi.nlm.nih.gov/dbEST/index.html
dbSTS
http://www.ncbi.nlm.nih.gov/dbSTS/index.html dbGSS
http://www2.ncbi.nlm.nih.gov/dbGSS/index.html
Genome (NCBI)
http://www.ncbi.nlm.nih.gov/Entrez/Genome/org.html
dbSNP
http://www.ncbi.nlm.nih.gov/SNP/
HTGS
http://www.ncbi.nlm.nih.gov/HTGS/
UniGene
http://www.ncbi.nlm.nih.gov/UniGene/ EMBL核苷酸数据库
http://www.ebi.ac.uk/embl Genome (EBI)
http://www.ebi.ac.uk/genomes/ 向EMBL数据库提交序列
http://www.ebi.ac.uk/embl/Submission/webin.html DDBJ
http://www.ddbj.nig.ac.jp/ Plant R gene database
http://www.ncgr.org/rgenes
启动子数据库
Eukaryotic promoter database
http://www.epd.isb-sib.ch
http://www.genome.ad.jp/dbget/dbget2.html
转录因子数据库 FRANSFAC
http://transfac.gbf.de ooTFD
http://www.ifti.org 蛋白质数据库 SWISS-PROT或TrEMBL
http://www.ebi.ac.uk/swissprot/
http://www.expasy.ch/sprot/ PIR
http://www-nbrf.georgetown.edu/pir/ PRF
http://www.prf.or.jp/ PDBSTR
http://www.genome.ad.jp/dbget-bin/www bfind?pdbstr-today Prosite
http://www.expasy.ch/sprot/prosite.html
结构数据库 PDB
http://www.rcsb.org/pdb
http://www.pdb.org NDB
http://ndbserver.rutgers.edu/NDB/ndb.html
http://ndbserver.rutgers.edu/ DNA-Binding Protein Database
http://ndbserver.rutgers.edu/NDB/structure-finder/dnabind/index.html NMR Nucleic Acids Database
http://ndbserver.rutgers.edu/NDB/structure-finder/nmr/index.html Protein Plus Database
http://ndbserver.rutgers.edu/NDB/structure-finder/protein/index.html Swiss 3Dimage
http://www.expasy.ch/sw3d/ SCOP
http://scop.mrc-lmb.cam.ac.uk/scop/ CATH
http://www.biochem.ucl.ac.uk/bsm/cath/ 酶、代谢和调控路径数据库 KEGG
http://www.genome.ad.jp/kegg/kegg2.html Enzyme Nomenclature Database
http://expasy.hcuge.ch/sprot/enzyme.html Protein Kinase Resource (PKR)
http://www.sdsc.edu/kinases/ LIGAND
http://www.genome.ad.jp/dbget/ligand.html WIT
http://www.cme.msu.edu/WIT/ EcoCyc
http://ecocyc.PangeaSystems.com/ecocyc/ UM-BBD
http://www.labmed.umn.edu/umbbd/
多种代谢路径数据库
http://www.unl.edu/stc-95/ResTools/biotools/biotools8.html
基因调控路径数据库(TRANSPATH)
http://transfac.gbf.de
基因组数据库 日本水稻基因组数据库(RGP)
http://rgp.dna.affrc.go.jp 华大水稻基因组框架图
http://www.genomics.org.cn 欧洲水稻测序(第12染色体)
http://www.genoscope.cns.fr 拟南芥基因组数据库
http://www.arabidopsis.org USDA Database
http://www.nal.usda.gov/ Demeter’s Genomes
http://genome.cornell.edu RiceGenes
http://genome.cornell.edu/cgi-bin/WebAce/webace?db=ricegenes RiceBlastDB
http://genome.cornell.edu/cgi-bin/WebAce/webace?db=riceblastdb FlyBase
http://flybase.bio.indiana.edu/.bin/fbidq.html?FBgn0003075 Mouse Genome Informatics
http://www.informatics.jax.org/bin/query_accession?id=MGI:97555 Saccharomyces Genome Database
http://genome-www.stanford.edu/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22 多种基因组数据库
http://www.hgmp.mrc.ac.uk/GenomeWeb 文献数据库 PubMed
http://www.ncbi.nlm.nih.gov/PubMed/ OMIM
http://www.ncbi.nlm.nih.gov/Omim/ Agricola
http://www.nal.usda.gov/ag98/
关键词为基础的数据库检索 Entrez
http://www.ncbi.nlm.nih.gov/Entrez/ Entrez Nucleotide Sequence Search
http://www.ncbi.nlm.nih.gov/Entrez/nucleotide.html Entrez Protein Sequence Search
http://www.ncbi.nlm.nih.gov/Entrez/protein.html Batch Entrez
http://www.ncbi.nlm.nih.gov/Entrez/batch.html Sequence Retrieval System, India
http://bioinfo.ernet.in:80/srs5/ Sequence Retrieval System, Singapore
http://www.bic.nus.edu.sg:80/srs5/ Sequence Retrieval System, US
http://iubio.bio.indiana.edu:80/srs/srsc Sequence Retrieval System, UK
http://srs.ebi.ac.uk/ GetEntry Nucleotide & Protein Sequence Search
http://ftp2.ddbj.nig.ac.jp:8000/getstart-e.html Database Search with Key Words
http://ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.html DBGET/LinkDB
http://www.genome.ad.jp/dbget/dbget2.html
序列为基础的数据库检索 BLAST
http://www.ncbi.nlm.nih.gov/BLAST/ FASTA
http://www2.ebi.ac.uk/fasta3/ BLITZ
http://www2.ebi.ac.uk/bicsw/ SSearch
http://www2.igh.cnrs.fr/bin/ssearch-guess.cgi Electronic PCR
http://www.ncbi.nlm.nih.gov/STS/ Proteome analysis
http://www.ebi.ac.uk/proteome/
多序列分析 Clustal multiple sequence alignment
http://dot.imgen.bcm.tmc.edu:9331/multi-align/Options/clustalw. html BCM
http://dot.imgen.bcm.tmc.edu:9331/multi-align/multi-align.html EBI ClustalW analysis
http://www.ebi.ac.uk 系谱分析 PAUP
http://onyx.si.edu/PAUP/ EBI ClustalW analysis
http://www.ebi.ac.uk GCG package
http://www.gcg.com/ PHYLIP
http://evolution.genetics.washington.edu/phylip.html MEGA/METREE
http://www.bio.psu.edu/imeg Hennig86
http://www.vims.edu/~mes/hennig/software.html GAMBIT
http://www.lifesci.ucla.edu/mcdbio/Faculty/Lake/Research/Programs/ MacClade
http://phylogeny.arizona.edu/macclade/macclade.html Phylogenetic analysis
http://www.unl.edu/stc-95/ResTools/biotools/biotools2.html
基因结构预测分析 GENSCAN
http://genes.mit.edu/GENSCAN.html GeneFinder
http://genomic.sanger.ac.uk/gf/gf.shtml
http://www.softberry.com/nucleo.html Gene Feature Searches
http://dot.imgen.bcm.tmc.edu:9331/ Grail
http://compbio.ornl.gov/Grail-1.3/ GrailEXP
http://grail.lsd.ornl.gov/grailexp/ GeneMark
http://genemark.biology.gatech.edu/GeneMark/hmmchoice.html Veil
http://www.cs.jhu.edu/labs/compbio/veil.html AAT
http://genome.cs.mtu.edu/aat.html GENEID
http://www.imim.es/GeneIdentification/Geneid/geneid_input.html Genlang
http://cbil.humgen.upenn.edu/~sdong/genlang_home.html GeneParser
http://beagle.colorado.edu/~eesnyder/GeneParser.html Glimmer
http://www.cs.jhu.edu/labs/compbio/glimmer.html MZEF
http://www.cshl.org/genefinder Procrustes
http://www-hto.usc.edu/software/procrustes/
蛋白质结构预测分析 Expasy
http://www.expasy.ch/ Predicting protein secondary structure
http://dot.imgen.bcm.tmc.edu:9331/pssprediction/pssp.html Predicting protein 3D Structures
http://dove.embl-heidelberg.de/3D/ Predicting protein structures
http://dot.imgen.bcm.tmc.edu:9331/seq-search/struc-predict.html
其它分析工具和软件 Putative DNA Sequencing Errors Check
http://www.bork.embl-heidelberg.de/Frame/ MatInspector
http://www.gsf.de/cgi-bin/matsearch.pl FastM
http://www.gsf.de/cgi-bin/fastm.pl Web Signal Scan
http://www.dna.affrc.go.jp/htdocs/sigscan/signal.html BCM Search Launcher
http://dot.imgen.bcm.tmc.edu:9331/seq-util/seq-util.html Webcutter
http://www.firstmarket.com/cutter/cut2.html Translate DNA to protein
http://www.expasy.ch/tools/dna.html ABIM
http://www-biol.univ-mrs.fr/english/logligne.html sequence motifs: Pfam
http://www.sanger.ac.uk/Pfam/
http://pfam.wustl.edu/ ProDom
http://protein.toulouse.inra.fr/prodom.html PRINTS
http://www.biochem.ucl.ac.uk/bsm/dbbrowser/PRINTS/
其它 多种数据库、分析工具和生物信息学机构
http://www.unl.edu/stc-95/Restools/biotools 多种数据库和分析工具
http://www.ebi.ac.uk/Tools/ Comparative sequence analysis
http://www.bork.embl-heidelberg.de/ 功能基因组分析 Transcription profiling technologies
http://www.ncbi.nlm.nih.gov/ncicgap/expression_tech_info.html Protocols for cDNA array technology
http://cmgm.stanford.edu/pbrown/array.html Data management and analysis of gene expression arrays
http://www.nhgri.nih.gov/DIR/LCG/15k/HTML/
Examples of commercially available filter arrays: GeneFiltersTM (Research Genetics)
http://www.resgen.com Gene Discovery Arrays (Genome Systems)
http://www.genomesystems.com AtlasTM Arrays (CLONTECH)
http://www.clontech.com
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www.shumo.cn 时间:2006-12-26 13:42:58 来源: 点击:3761
用生物信息学数据库和分析工具网址
数据库
因特网网址
网上生物信息学教程 EMBL biocomputing tutorials
http://www.bio.cam.ac.uk/Embnetut/Gcg/index.html Plant genome dababase tutorial
http://www.nal.usda.gov/pgdic
生物信息学机构
NCBI
http://www.ncbi.nlm.nih.gov/
International Nucleotide Sequence Database Collaboration.
http://www.ncbi.nlm.nih.gov/collab/ EBI
http://www.ebi.ac.uk/ USDA
http://www.nal.usda.gov/ Sanger Centre
http://genomic.sanger.ac.uk/ 北京大学生物信息学中心
http://www.cbi.pku.edu.cn
数据库信息发布及其它
GenBank Release Notes
ftp://ncbi.nlm.nih.gov/genbank/gbrel.txt
dbEST summary report
http://www.ncbi.nlm.nih.gov/dbEST/dbESTsummarv.html
EMBL release notes
http://www.genome.ad.jp/dbget-bin/show man?embl
DDBJ release notes
http://www.ddbj.nig.ac.jp/ddbjnew/ddbj relnote.html
Eukaryotic promoter database release notes
http://www.genome.ad.jp/dbget/dbget2.html
SwissProt release notes
http://www.genome.ad.jp/dbget-bin/show man?swissprot
PIR release notes
http://www.genome.ad.jp/dbget-bin/show man?pir
PRF release notes
http://www.genome.ad.jp/dbget-bin/show man?prf
PDBSTR release notes
http://www.genome.ad.jp/dbget-bin/show man?pdbstr
Prosite release notes
http://www.genome.ad.jp/dbget-bin/show man?prosite
PDB release notes
http://www.genome.ad.jp/dbget-bin/show man?pdb
KEGG release notes
http://www.genome.ad.jp/dbget-bin/show man?pathway
核苷酸数据库
GenBank
http://www.ncbi.nlm.nih.gov/
dbEST
http://www.ncbi.nlm.nih.gov/dbEST/index.html
dbSTS
http://www.ncbi.nlm.nih.gov/dbSTS/index.html dbGSS
http://www2.ncbi.nlm.nih.gov/dbGSS/index.html
Genome (NCBI)
http://www.ncbi.nlm.nih.gov/Entrez/Genome/org.html
dbSNP
http://www.ncbi.nlm.nih.gov/SNP/
HTGS
http://www.ncbi.nlm.nih.gov/HTGS/
UniGene
http://www.ncbi.nlm.nih.gov/UniGene/ EMBL核苷酸数据库
http://www.ebi.ac.uk/embl Genome (EBI)
http://www.ebi.ac.uk/genomes/ 向EMBL数据库提交序列
http://www.ebi.ac.uk/embl/Submission/webin.html DDBJ
http://www.ddbj.nig.ac.jp/ Plant R gene database
http://www.ncgr.org/rgenes
启动子数据库
Eukaryotic promoter database
http://www.epd.isb-sib.ch
http://www.genome.ad.jp/dbget/dbget2.html
转录因子数据库 FRANSFAC
http://transfac.gbf.de ooTFD
http://www.ifti.org 蛋白质数据库 SWISS-PROT或TrEMBL
http://www.ebi.ac.uk/swissprot/
http://www.expasy.ch/sprot/ PIR
http://www-nbrf.georgetown.edu/pir/ PRF
http://www.prf.or.jp/ PDBSTR
http://www.genome.ad.jp/dbget-bin/www bfind?pdbstr-today Prosite
http://www.expasy.ch/sprot/prosite.html
结构数据库 PDB
http://www.rcsb.org/pdb
http://www.pdb.org NDB
http://ndbserver.rutgers.edu/NDB/ndb.html
http://ndbserver.rutgers.edu/ DNA-Binding Protein Database
http://ndbserver.rutgers.edu/NDB/structure-finder/dnabind/index.html NMR Nucleic Acids Database
http://ndbserver.rutgers.edu/NDB/structure-finder/nmr/index.html Protein Plus Database
http://ndbserver.rutgers.edu/NDB/structure-finder/protein/index.html Swiss 3Dimage
http://www.expasy.ch/sw3d/ SCOP
http://scop.mrc-lmb.cam.ac.uk/scop/ CATH
http://www.biochem.ucl.ac.uk/bsm/cath/ 酶、代谢和调控路径数据库 KEGG
http://www.genome.ad.jp/kegg/kegg2.html Enzyme Nomenclature Database
http://expasy.hcuge.ch/sprot/enzyme.html Protein Kinase Resource (PKR)
http://www.sdsc.edu/kinases/ LIGAND
http://www.genome.ad.jp/dbget/ligand.html WIT
http://www.cme.msu.edu/WIT/ EcoCyc
http://ecocyc.PangeaSystems.com/ecocyc/ UM-BBD
http://www.labmed.umn.edu/umbbd/
多种代谢路径数据库
http://www.unl.edu/stc-95/ResTools/biotools/biotools8.html
基因调控路径数据库(TRANSPATH)
http://transfac.gbf.de
基因组数据库 日本水稻基因组数据库(RGP)
http://rgp.dna.affrc.go.jp 华大水稻基因组框架图
http://www.genomics.org.cn 欧洲水稻测序(第12染色体)
http://www.genoscope.cns.fr 拟南芥基因组数据库
http://www.arabidopsis.org USDA Database
http://www.nal.usda.gov/ Demeter’s Genomes
http://genome.cornell.edu RiceGenes
http://genome.cornell.edu/cgi-bin/WebAce/webace?db=ricegenes RiceBlastDB
http://genome.cornell.edu/cgi-bin/WebAce/webace?db=riceblastdb FlyBase
http://flybase.bio.indiana.edu/.bin/fbidq.html?FBgn0003075 Mouse Genome Informatics
http://www.informatics.jax.org/bin/query_accession?id=MGI:97555 Saccharomyces Genome Database
http://genome-www.stanford.edu/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22 多种基因组数据库
http://www.hgmp.mrc.ac.uk/GenomeWeb 文献数据库 PubMed
http://www.ncbi.nlm.nih.gov/PubMed/ OMIM
http://www.ncbi.nlm.nih.gov/Omim/ Agricola
http://www.nal.usda.gov/ag98/
关键词为基础的数据库检索 Entrez
http://www.ncbi.nlm.nih.gov/Entrez/ Entrez Nucleotide Sequence Search
http://www.ncbi.nlm.nih.gov/Entrez/nucleotide.html Entrez Protein Sequence Search
http://www.ncbi.nlm.nih.gov/Entrez/protein.html Batch Entrez
http://www.ncbi.nlm.nih.gov/Entrez/batch.html Sequence Retrieval System, India
http://bioinfo.ernet.in:80/srs5/ Sequence Retrieval System, Singapore
http://www.bic.nus.edu.sg:80/srs5/ Sequence Retrieval System, US
http://iubio.bio.indiana.edu:80/srs/srsc Sequence Retrieval System, UK
http://srs.ebi.ac.uk/ GetEntry Nucleotide & Protein Sequence Search
http://ftp2.ddbj.nig.ac.jp:8000/getstart-e.html Database Search with Key Words
http://ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.html DBGET/LinkDB
http://www.genome.ad.jp/dbget/dbget2.html
序列为基础的数据库检索 BLAST
http://www.ncbi.nlm.nih.gov/BLAST/ FASTA
http://www2.ebi.ac.uk/fasta3/ BLITZ
http://www2.ebi.ac.uk/bicsw/ SSearch
http://www2.igh.cnrs.fr/bin/ssearch-guess.cgi Electronic PCR
http://www.ncbi.nlm.nih.gov/STS/ Proteome analysis
http://www.ebi.ac.uk/proteome/
多序列分析 Clustal multiple sequence alignment
http://dot.imgen.bcm.tmc.edu:9331/multi-align/Options/clustalw. html BCM
http://dot.imgen.bcm.tmc.edu:9331/multi-align/multi-align.html EBI ClustalW analysis
http://www.ebi.ac.uk 系谱分析 PAUP
http://onyx.si.edu/PAUP/ EBI ClustalW analysis
http://www.ebi.ac.uk GCG package
http://www.gcg.com/ PHYLIP
http://evolution.genetics.washington.edu/phylip.html MEGA/METREE
http://www.bio.psu.edu/imeg Hennig86
http://www.vims.edu/~mes/hennig/software.html GAMBIT
http://www.lifesci.ucla.edu/mcdbio/Faculty/Lake/Research/Programs/ MacClade
http://phylogeny.arizona.edu/macclade/macclade.html Phylogenetic analysis
http://www.unl.edu/stc-95/ResTools/biotools/biotools2.html
基因结构预测分析 GENSCAN
http://genes.mit.edu/GENSCAN.html GeneFinder
http://genomic.sanger.ac.uk/gf/gf.shtml
http://www.softberry.com/nucleo.html Gene Feature Searches
http://dot.imgen.bcm.tmc.edu:9331/ Grail
http://compbio.ornl.gov/Grail-1.3/ GrailEXP
http://grail.lsd.ornl.gov/grailexp/ GeneMark
http://genemark.biology.gatech.edu/GeneMark/hmmchoice.html Veil
http://www.cs.jhu.edu/labs/compbio/veil.html AAT
http://genome.cs.mtu.edu/aat.html GENEID
http://www.imim.es/GeneIdentification/Geneid/geneid_input.html Genlang
http://cbil.humgen.upenn.edu/~sdong/genlang_home.html GeneParser
http://beagle.colorado.edu/~eesnyder/GeneParser.html Glimmer
http://www.cs.jhu.edu/labs/compbio/glimmer.html MZEF
http://www.cshl.org/genefinder Procrustes
http://www-hto.usc.edu/software/procrustes/
蛋白质结构预测分析 Expasy
http://www.expasy.ch/ Predicting protein secondary structure
http://dot.imgen.bcm.tmc.edu:9331/pssprediction/pssp.html Predicting protein 3D Structures
http://dove.embl-heidelberg.de/3D/ Predicting protein structures
http://dot.imgen.bcm.tmc.edu:9331/seq-search/struc-predict.html
其它分析工具和软件 Putative DNA Sequencing Errors Check
http://www.bork.embl-heidelberg.de/Frame/ MatInspector
http://www.gsf.de/cgi-bin/matsearch.pl FastM
http://www.gsf.de/cgi-bin/fastm.pl Web Signal Scan
http://www.dna.affrc.go.jp/htdocs/sigscan/signal.html BCM Search Launcher
http://dot.imgen.bcm.tmc.edu:9331/seq-util/seq-util.html Webcutter
http://www.firstmarket.com/cutter/cut2.html Translate DNA to protein
http://www.expasy.ch/tools/dna.html ABIM
http://www-biol.univ-mrs.fr/english/logligne.html sequence motifs: Pfam
http://www.sanger.ac.uk/Pfam/
http://pfam.wustl.edu/ ProDom
http://protein.toulouse.inra.fr/prodom.html PRINTS
http://www.biochem.ucl.ac.uk/bsm/dbbrowser/PRINTS/
其它 多种数据库、分析工具和生物信息学机构
http://www.unl.edu/stc-95/Restools/biotools 多种数据库和分析工具
http://www.ebi.ac.uk/Tools/ Comparative sequence analysis
http://www.bork.embl-heidelberg.de/ 功能基因组分析 Transcription profiling technologies
http://www.ncbi.nlm.nih.gov/ncicgap/expression_tech_info.html Protocols for cDNA array technology
http://cmgm.stanford.edu/pbrown/array.html Data management and analysis of gene expression arrays
http://www.nhgri.nih.gov/DIR/LCG/15k/HTML/
Examples of commercially available filter arrays: GeneFiltersTM (Research Genetics)
http://www.resgen.com Gene Discovery Arrays (Genome Systems)
http://www.genomesystems.com AtlasTM Arrays (CLONTECH)
http://www.clontech.com
生物信息学的定义
生物信息学的英文文摘
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最常用的网站和最知名的网站有那些啊?搜网址大全!!
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生物信息学是在什么样的背景下产生的?
生物信息学在中科院好考吗?中科院的考研情况怎么样?
生物信息学包不包括在分子生物学的范畴里面啊?
生物信息学的发展包括哪几个阶段?
出国读生物信息学研究生可以选择的学校
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有关蛋白质组及生物信息学方面的专业网站?
我想考生物信息学方面的博士,请问那个学校,哪个导师生物信息学方向好一点?请多指点。
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韩国服饰大全的网址是什么?
网址大全的域名谁知道?
谁知道代码大全的网址?
有谁知道那里有信息学的网址吗?
ab126网址大全 的网址在哪?
网址大全上没有的网址上哪找